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Enemark Sandoval posted an update 1 year, 3 months ago
Delta-self-consistent field (ΔSCF) theory is a conceptually simple and computationally inexpensive method for finding excited states. Using the maximum overlap method to guide optimization of the excited state, ΔSCF has been shown to predict excitation energies with a level of accuracy that is competitive with, and sometimes better than, that of time-dependent density functional theory. Here, we benchmark ΔSCF on a larger set of molecules than has previously been considered, and, in particular, we examine the performance of ΔSCF in predicting transition dipole moments, the essential quantity for spectral intensities. A potential downfall for ΔSCF transition dipoles is origin dependence induced by the nonorthogonality of ΔSCF ground and excited states. We propose and test a simple correction for this problem, based on symmetric orthogonalization of the states, and demonstrate its use on bacteriochlorophyll structures sampled from the photosynthetic antenna in purple bacteria.Using a recently developed technique to estimate the equilibrium free energy of glassy materials, we explore if equilibrium simulation methods can be used to estimate the solubility of amorphous solids. As an illustration, we compute the chemical potentials of the constituent particles of a two-component Kob-Andersen model glass former. To compute the chemical potential for different components, we combine the calculation of the overall free energy of the glass with a calculation of the chemical potential difference of the two components. We find that the standard method to compute chemical potential differences by thermodynamic integration yields not only a wide scatter in the chemical potential values, but also, more seriously, the average of the thermodynamic integration results is well above the extrapolated value for the supercooled liquid. However, we find that if we compute the difference in the chemical potential of the components with the non-equilibrium free-energy expression proposed by Jarzynski, we obtain a good match with the extrapolated value of the supercooled liquid. The extension of the Jarzynski method that we propose opens a potentially powerful route to compute the free-energy related equilibrium properties of glasses. We find that the solubility estimate of amorphous materials obtained from direct-coexistence simulations is only in fair agreement with the solubility prediction based on the chemical potential calculations of a hypothetical “well-equilibrated glass.” In direct-coexistence simulations, we find that, in qualitative agreement with experiments, the amorphous solubility decreases with time and attains a low solubility value.The objective of this paper is to describe a new data-driven framework for computational screening and discovery of a class of materials termed “metavalent” solids. “Metavalent” solids possess characteristics that are nominally associated with metallic and covalent bonding (in terms of conductivity and coordination numbers) but are distinctly different from both because they show anomalously large response properties and a unique bond-breaking mechanism that is not observed in either covalent or metallic solids. The paper introduces the use of Hirshfeld surface analysis to provide quantum level descriptors that can be used for rapid screening of crystallographic data to identify potentially new “metavalent” solids with novel and emergent properties.Semilocal (SL) density functional approximations (DFAs) are widely applied but have limitations due to their inability to incorporate long-range van der Waals (vdW) interaction. Non-local functionals (vdW-DF, VV10, and rVV10) or empirical methods (DFT+D, DFT+vdW, and DFT+MBD) are used with SL-DFAs to account for such missing interaction. The physisorption of a molecule on the surface of the coinage metals (Cu, Ag, and Au) is a typical example of systems where vdW interaction is significant. However, it is difficult to find a general method that reasonably describes both adsorption energy and geometry of even the simple prototypes of cyclic and heterocyclic aromatic molecules such as benzene (C6H6) and thiophene (C4H4S), respectively, with reasonable accuracy. In this work, we present an alternative scheme based on Zaremba-Kohn theory, called DFT+vdW-dZK. We show that unlike other popular methods, DFT+vdW-dZK and particularly SCAN+vdW-dZK give an accurate description of the physisorption of a rare-gas atom (xenon) and two small albeit diverse prototype organic molecules on the (111) surfaces of the coinage metals.Molecular-orbital-based machine learning (MOB-ML) enables the prediction of accurate correlation energies at the cost of obtaining molecular orbitals. Ziprasidone agonist Here, we present the derivation, implementation, and numerical demonstration of MOB-ML analytical nuclear gradients, which are formulated in a general Lagrangian framework to enforce orthogonality, localization, and Brillouin constraints on the molecular orbitals. The MOB-ML gradient framework is general with respect to the regression technique (e.g., Gaussian process regression or neural networks) and the MOB feature design. We show that MOB-ML gradients are highly accurate compared to other ML methods on the ISO17 dataset while only being trained on energies for hundreds of molecules compared to energies and gradients for hundreds of thousands of molecules for the other ML methods. The MOB-ML gradients are also shown to yield accurate optimized structures at a computational cost for the gradient evaluation that is comparable to a density-corrected density functional theory calculation.A Kohn-Sham (KS) inversion determines a KS potential and orbitals corresponding to a given electron density, a procedure that has applications in developing and evaluating functionals used in density functional theory. Despite the utility of KS inversions, application of these methods among the research community is disproportionately small. We implement the KS inversion methods of Zhao-Morrison-Parr and Wu-Yang in a framework that simplifies analysis and conversion of the resulting potential in real-space. Fully documented Python scripts integrate with PySCF, a popular electronic structure prediction software, and Fortran alternatives are provided for computational hot spots.